Monday, March 2, 2020

Balacned& Unbalanced Translocation

Translocation means a part of the chromosome is moved into another chromosome.
Translocation can be differed like balanced/unbalanced or reciprocal/robertsonian

The term balanced means an even exchange of material with no extra or missing genetic material.
so looking at the genomic level, if there is no loss of gene, it is called a balanced translocation.
Let's see some examples

the picture is from https://en.wikipedia.org/wiki/Chromosomal_translocation
this shows a translocation between chromosome 4 and chromosome 20
even though the amount of exchange( the amount of translocated chomosome of 4 and 20) is different, still the genomic sum is the same so it is considered as balanced translocation.
Still confused? lets look at this picture.
the picture is from http://zimdarsgen564s14.weebly.com/recent-research-updates.html
the picture of the below shows the unbalanced translocation
because the translocated parts are not going to directly to the homologus, causing a very tiny chromosome. so that small chromosome cannot survive, leading to karyotype of 45, making a gene loss.

Friday, February 28, 2020

Regulation of genes#2. Operon

"In genetics, an operon is a functioning unit of DNA containing a cluster of genes under the control of a single promoter."

.......says wikipedia.
Yeah, so operon is like genes are not likely to be goofing around cells, instead they build up and be placed in order. You will find these things in biology very much. (such as transcription factory)

Lets see some operons

-The lac operon 
Image result for lac operon
this is the lac operon of E.coli.
lac-z codes b-galatosidase, lac-Y is permease, lac-A is acetyl transferase.
each one of them is an enzyme. the last one is not yet identified in cell mechanism.
the galactosidase makes lactose into glucose and galactose.

-The Trp operon
Image result for trp operon
another operon of E.coli
trp E,D,C,B,A each takes small part to from trp

* The way operon functions
Type 1: Activated by activator
Type 2: Activated by loss of repressor

    Type2-1: Inducible operon 유도성 오페론ex: lac
the regulatory gene lacI codes activated repressor, so if there is no allolactose to deactivate the protein, Lac operon gets inhibitied

    Type2-2:repressible operon 억제성 오페론ex: trp
the regulatory gene trpR codes deactivated repressor, so if there is no trp to activate the repressor, then the operon will continue its anablolic reaction to make trp.
So, it makes trp a negative feedback control

* one thing that campbell didn't tell ya
trp operon can be controlled by a mechanism called attenuator.
since E.coli is prokaryotic the RNA is forms continuous hairpin structures while transcripted. There are 4 parts of mRNA that contributes to this hairpin structure.
1-2,2-3 hairpin loop is not that strong but 3-4 hairpin loop is strong so it can stop transription
Case 1) sufficient Trp
the ribosome continues to region2, so 3-4 hairpin loop is made so transcription stops
Case 2) Trp insufficient
it lacks 3-4hairpin loops so transcription continues.

Regulation of Genes#1.The map

THE MAP OF GENE REGULATION

-transcription
1. operon(prokaryote)
2. DNA methylation (eukaryote)
3. transcription factor
4. transcription factory
5.chromatin structure
6.piwi-RNA

-post-transcription regulation
1. RNA processing
2. RNA editing /alternative splicing

-translation regulation
1. mRNA decomposition
2. ORF shifting
3. mi& si RNA

-post-translation regulation
1. protein activation
 covalent bond
 pH, Temperature
 segregation
 regulator/ control elements
 allosteric regulation
 substrate concentration
2. protein decomposition
 proteasome
 lysosome

This is Starcasso

Hello world!
My name is Starcasso, and i am a korean high school student(last year in 2020) and i want to major in biology. But, I like all science and have some experience in each subject haha.
I just opened this blog to share the world what i like and hopefully your interest too.
So Keep an eye on me hehe
Thanks for reading as always.